the bioinformatics chat

A podcast about computational biology, bioinformatics, and next generation sequencing.

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episode 47: Reproducible pipelines and NGLess with Luis Pedro Coelho


NGLess is a programming language specifically targeted at next generation sequencing (NGS) data processing. In this episode we chat with its main developer, Luis Pedro Coelho, about the benefits of domain-specific languages, pros and cons of Haskell in bioinformatics, reproducibility, and of course NGLess itself.

Links:

  • NGLess on GitHub
  • NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language (Luis Pedro Coelho, Renato Alves, Paulo Monteiro, Jaime Huerta-Cepas, Ana Teresa Freitas, Peer Bork)


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 2020-06-24  57m