Supercharge your research with the latest scientific software showcased in the Journal of Open Source Software (JOSS). Hear directly from authors on their work, their motivations, and new ways open source software can accelerate your work. Hosted by editor-in-chief Arfon Smith and founding editor Abby Cabunoc Mayes, each episode features an interview with different authors of published papers in JOSS. Tune in to learn about the latest developments in research software engineering and open science, and how they are changing the way research is conducted. New episodes every other Thursday.
https://joss.theoj.org/
Gesamtlänge aller Episoden: 3 hours 47 minutes
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episode 8: Deep Learning for 3D Protein Structure Predictions – Giulia Crocioni on DeepRank2
#8: Giulia Crocioni joins Arfon and Abby to discuss DeepRank2, a deep learning framework for 3D protein structure predictions. Giulia is a Research Software Engineer at the Netherlands eScience Center where she uses different machine learning techniques to develop and contribute to methodologies and applications to answer life sciences research questions. You can follow Giulia on LinkedIn See the show notes: https://blog.joss.theoj...
episode 7: Adding Defect Analysis to the Materials Project – Jimmy Shen on pymatgen-analysis-defects
#7: Jimmy Shen sat down with Arfon and Abby to discuss the role of defect analysis in semiconductor research, the Materials Project, and the development of pymatgen-analysis-defects.
Jimmy is a postdoc at the Lawrence Livermore National Laboratory where he tries his best to automate himself away.
You can follow Jimmy on GitHub @jmmshn, Linkedin, or on Google Scholar.
See the show notes: https://blog.joss.theoj...
episode 6: Streamlining Molecular Dynamics – Marjan Albooyeh and Chris Jones on FlowerMD
#6: Marjan Albooyeh and Chris Jones chat with Arfon and Abby about their experience building FlowerMD, an open-source library of recipes for molecular dynamics workflows.
Marjan and Chris are both grad students in Dr. Jankowski’s lab at Boise State University where they use molecular dynamics to study materials for aerospace applications and organic solar cells.
Before joining the lab, Marjan was a machine learning researcher...
episode 5: Rewrite in Rust – Gui Castelão and Luiz Irber on Gibbs SeaWater Oceanographic Toolbox in Rust
#5: Gui Castelão and Luiz Irber join Arfon and Abby to discuss their work implementing the Gibbs Sea Water Oceanographic Toolbox of TEOS-10 in Rust, and the role of instrument builders in science.
Gui is an oceanographer at the Scripps Institution of Oceanography, previously part of the Instrument Developing Group. Luiz is a Computer Science PhD at UC Davis and an avid Rustacean.
Gui’s website: www.castelao.net.Luiz’s website: LuizIrber...
episode 4: Applying ML to Quantum Monte Carlo Simulations – Nicolas Renaud on QMCTorch
#4: Nicolas Renaud joins Arfon and Abby to discuss QMCTorch, a PyTorch implementation of real-space Quantum Monte-Carlo simulations of molecular systems, and work to promote research software as a research output.
Nico is the head of the Natural Sciences and Engineering section of the Netherlands eScience Center and Senior Researcher at the Quantum Application Lab. He focuses on the intersection of material sciences and machine learning...
episode 3: Studying Superbugs – Juliette Hayer on Baargin
#3: Juliette Hayer joins Arfon and Abby to discuss Baargin, an open source tool she created to analyze bacterial genomes, especially those resistant to antibiotics...
episode 2: Astronomy in the Open – Dr. Taylor James Bell on Eureka!
#2: In this episode of Open Source for Researchers hosts Abby and Arfon explore the world of open source software in astronomy with Dr. Taylor James Bell, a BAER Institute postdoc at NASA Ames. Eureka! is an end-to-end pipeline designed for JWST (James Webb Space Telescope) time series observations. We chat about the motivations behind Eureka!, its unique features, and the democratization of exoplanet science...
episode 1: Eva Maxfield Brown on Speakerbox – Open Source Speaker Identification for Political Science
#1: In the first episode of Open Source for Researchers, hosts Arfon and Abby sit down with Eva Maxfield Brown to discuss Speakerbox, an open source speaker identification tool.
Originally part of the Council Data Project, Speakerbox was used to train models to identify city council members speaking in transcripts, starting with cities like Seattle. Speakerbox can run on your laptop, making this a cost-effective solution for many civic hackers, citizen scientists, and now ....
Introducing Open Source for Researchers
Get ready to dive into the world of open source software for researchers with the new podcast, Open Source for Researchers! Join hosts Arfon Smith and Abby Cabunoc Mayes as they give you a sneak peek of what's to come. Open Source for Researchers launches January 25th, 2024!
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