the bioinformatics chat

A podcast about computational biology, bioinformatics, and next generation sequencing.

https://bioinformatics.chat

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episode 3: miRNA target site prediction and seedVicious with Antonio Marco


In this episode Antonio Marco talks about miRNA target site prediction and his tool, seedVicious.

Links:

  • seedVicious preprint
  • seedVicious manual


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 2017-05-12  56m
 
 

episode 2: Single-cell RNA sequencing with Aleksandra Kolodziejczyk


In this episode Aleksandra Kolodziejczyk talks about single-cell RNA sequencing.

Links:

  • A review paper by Aleksandra
  • Comparative analysis of single-cell RNA sequencing methods, including the cost table
  • Power Analysis of Single Cell RNA‐Sequencing Experiments
  • Monocle: a toolkit for analyzing single-cell gene expression experiments
  • Questions from listeners on bioinformatics...


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 2017-04-29  1h8m
 
 

episode 1: Transcriptome assembly and Scallop with Mingfu Shao


In this episode, Mingfu Shao talks about Scallop, an accurate reference-based transcript assembler.

Links:

  • The preprint about Scallop
  • The preprint about flow decomposition
  • The video of a talk by Ben Langmead about Rail-RNA
  • The preprint about Rail-RNA


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 2017-04-16  43m